Bacterial Genome Data mining & Bioinformatic Analysis
Curriculum vitae for Dr. Xiangyang Li
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    Fudan University email (复旦大学邮箱)  


1. Li X*, Chen F, Chen Y. Gcluster: a simple-to-use tool for visualizing and comparing genome contexts for numerous genomes. Bioinformatics 2020, accepted, 10.1093/bioinformatics/btaa212. (SCI收录, IF=4.531), *Corresponding author

2. Xiangyang Li, April Z. Gu, Ye Zhang, Bin Xie, Dan Li, Jianmin Chen. Sub-lethal Concentrations of Heavy Metals Induce Antibiotic Resistance via Mutagenesis. Journal of Hazardous Materials 2019, 369:9–16.

3. Xiangyang Li, Linshuang Zhang, Gejiao Wang. Genomic Evidence Reveals the Extreme Diversity and Wide Distribution of the Arsenic-Related Genes in Burkholderiales. PLoS ONE 2014, 9(3): e92236. doi:10.1371/journal.pone.0092236

4. Linshuang Zhang, Xiangyang Li, Feng Zhang, Gejiao Wang (: co-first author). Genomic analysis of Agrobacterium radiobacter DSM 30147T and emended description of A. radiobacter (Beijerinck and van Delden 1902) Conn 1942 (Approved Lists 1980) emend. Sawada et al. 1993. Stand. Genomic Sci 2013, 9:574-84. [PDF download]

5. Xiangyang Li, Yao Hu, Jing Gong, Linshuang Zhang, Gejiao Wang. Comparative genome characterization of Achromobacter members reveals potential genetic determinants facilitating the adaptation to a pathogenic lifestyle. Applied microbiology and biotechnology 2013, 97(14):6413-6425.

6. Xiangyang Li, Jing Gong, Yao Hu, Lin Cai, Laurel Johnstone, Gregor Grass, Christopher Rensing, Gejiao Wang. Genome Sequence of the Moderately Halotolerant, Arsenite-Oxidizing Bacterium Pseudomonas stutzeri TS44. Journal of bacteriology 2012, 194(16):4473-4.

7. Xiangyang Li, Yao Hu, Jing Gong, Yanbing Lin, Laurel Johnstone, Christopher Rensing, Gejiao Wang. Genome sequence of the highly efficient arsenite-oxidizing bacterium Achromobacter arsenitoxydans SY8. Journal of bacteriology 2012, 194(5):1243-4.

8. Minyan He, Xiangyang Li, Hongliang Liu, Susan J Miller, Gejiao Wang, Christopher Rensing. Characterization and genomic analysis of a highly chromate resistant and reducing bacterial strain Lysinibacillus fusiformis ZC1. Journal of hazardous materials 2010, 185(2-3):682-8.

9. Minyan He, Xiangyang Li, Liang Guo, Susan J Miller, Christopher Rensing, Gejiao Wang. Characterization and genomic analysis of chromate resistant and reducing Bacillus cereus strain SJ1. BMC microbiology 2010, 10:221.

10. Lin Cai, Christopher Rensing, Xiangyang Li, Gejiao Wang. Novel gene clusters involved in arsenite oxidation and resistance in two arsenite oxidizers: Achromobacter sp. SY8 and Pseudomonas sp. TS44. Applied microbiology and biotechnology 2009, 83(4):715-25.

11.Ye Zhang, April Z.Gu, Tianyu Cen, Xiangyang Li, Miao He, Dan Li, Jianmin Chen. Sub-inhibitory concentrations of heavy metals facilitate the horizontal transfer of plasmid-mediated antibiotic resistance genes in water environment. Environmental Pollution, 2018,237:74-82.

12.Ye Zhang, April Z. Gu, Tianyu Cen, Xiangyang Li, Dan Li,Jianmin Chen. Petrol and diesel exhaust particles accelerate the horizontal transfer of plasmid-mediated antimicrobial resistance genes. Environment International, 2018, 114:280-287.

13.Ye Zhang, April Z. Gu, Shanshan Xie, Xiangyang Li, Tianyu Cen, Dan Li, Jianmin Chen, Nano-metal oxides induce antimicrobial resistance via radical-mediated mutagenesis. Environment International, 2018, 121(2): 1162-1171.

14. Li X, Zou X, Zhang K, Meng H, Shi D.2018. Draft genome sequence of Pseudomonas sp. LS-2, isolated from a diseased Gastrodiaelata plant. Microbiol Resour Announc, 2018, 7:e01342-18.

15.Qian Wang, Wentao Zhu, Entao Wang, Linshuang Zhang, Xiangyang Li, Gejiao Wang. Genomic identification of rhizobia-related strains and threshold of ANI and core-genome for family, genus and species. International Journal of Environmental & Agriculture Research, 2(6):76-86.


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